Φ, Ψ, and Ω dihedral angles in a peptide.

Image courtesy
Dr. Landry, Tulane.edu
Home > PDB structural analysis tools

PDB (Protein Databank) protein structural analysis tools

The following analysis are available: -

Compute internal
Φ, Ψ, and Ω torsional angles (Phi, Phi, Omega) from pdb file:
Run example analysis


Upload Brookhaven/pdb file below (file size limit: 4mb) below: -




Extract Produce Ramachandran plot from pdb file:

Upload Brookhaven/pdb file below (file size limit: 4mb) below: -


Extract protein sequence information from pdb file:
Run example extraction

Upload Brookhaven/pdb file below (file size limit: 4mb) below: -

 

Offline pdb-cli (command line interface) tools

The structural analysis tools provided here can also be run off-line (and in large batches), for this one can download the pdb-cli tools.

Supported operating systems: MS Windows command line, Linux-64 bit


Developed by Jamie Al-Nasir
Special thanks to Bob Vickers and Adrian Thomas for configuring the server